Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LGG | rs72929010 | chr2:201747351 | C/T | 1.79E-6 | 405 | 15.17 | 17.2 | 4.45 | KM Plot |
| LGG | rs72931086 | chr2:202042386 | T/G | 1.79E-6 | 405 | 15.3 | 15.63 | 4.45 | KM Plot |
| LGG | rs729347 | chr11:61221735 | G/A | 8.29E-5 | 401 | 16.68 | 17.2 | 14.5 | KM Plot |
| LGG | rs72936954 | chr4:84440873 | T/C | 4.8E-6 | 398 | 14.9 | 18.07 | 13.23 | KM Plot |
| LGG | rs729404 | chr11:61221118 | A/G | 0.0001 | 405 | 16.68 | 17.67 | 14.47 | KM Plot |
| LGG | rs72944659 | chr2:114459221 | G/A | 0 | 405 | 15.35 | 15.08 | 0.23 | KM Plot |
| LGG | rs7294962 | chr12:102240583 | T/C | 1.77E-7 | 400 | 14.45 | 19.17 | 20.9 | KM Plot |
| LGG | rs7297175 | chr12:56473808 | T/C | 9.17E-5 | 396 | 11.05 | 15.63 | 16.37 | KM Plot |
| LGG | rs7298925 | chr12:109924706 | C/T | 1.27E-8 | 407 | 15.25 | 16.55 | 6.63 | KM Plot |
| LGG | rs73064427 | chr4:875387 | A/G | 0 | 404 | 15.6 | 10.93 | 0.23 | KM Plot |
| LGG | rs73072227 | chr4:1049387 | C/T | 0.00014 | 398 | 16.25 | 12.17 | 8.07 | KM Plot |
| LGG | rs7308481 | chr12:69659299 | A/G | 0.000129 | 406 | 15.17 | 14.63 | 18.27 | KM Plot |
| LGG | rs73091892 | chr1:226628982 | G/T | 2.91E-5 | 405 | 15.33 | 15.33 | 13.97 | KM Plot |
| LGG | rs73093725 | chr1:226637553 | C/A | 2.84E-5 | 405 | 15.37 | 14.52 | 13.97 | KM Plot |
| LGG | rs73123868 | chr20:48450312 | C/A | 7.95E-9 | 407 | 15.72 | 10.6 | 6.83 | KM Plot |